I manage a number of sites for an Agency, and in pretty much all of them I see huge differences in the Search Queries data that you get from Search Console, vs. the integrated one you get in Analytics, after adding the Search Console account.
Everything is different, impressions, clics, CTR, avg. position. On one site in particular, Search Console reports a total of 687,137 impressions, whereas the same Search Console account added in Google Analytics says 2,258,182 impressions. What gives!!!
Does anyone else have this issue?