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JQuery Plugin files getting viruses even with CHMOD 755

I have a bunch of JQuery plugins (eg: masonry, isotope, carousel, etc) within a JavaScript folder in my root. These have been repeatedly infected with viruses making Google put alerts on my site. The ...
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Google says my site has malware but nothing comes up in Webmaster Tools

A few days ago my site was infected with Malware. I've sinced removed it and all is well. However, logging into the back end of my CMS I get the malware warning again. I've followed the instructions ...