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I am facing a very strange issue. My website is http://www.example.com (1) and order page is https://order.example.com (2).

When ever my user switch from (1) to (2), it creates problem and my transaction is assigned to (2) and comes in referral from (1). I have used cross domain tracking.

Assuming the issue is because of HTTPS but I'm not sure.

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You should probably add your tracking code to your question. –  dan Dec 16 '13 at 9:21

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