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I have 2 separate domains in my Google Analytics: abc.com and xyz.abc.com. The second domain is 3rd party shopping cart.

Right now the reporting for each is separate. I want to have them together so I can eventually set up goals and conversion tracking.

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In case of 1 top-level and multiple subdomains you can set up your tracking code to track everything related to the top-level domain. This will result in one profile that will contain all the traffic data related to all the sites within that domain (including subdomains). After this -if need be- you can separate the sites with advanced segments.

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